An in-depth understanding of the molecular processes composing aging is crucial to develop therapeutic approaches that decrease aging as a key risk factor for cognitive decline. Herein, we present a spatio-temporal brain atlas (15 different regions) of microRNA expression across ...
An in-depth understanding of the molecular processes composing aging is crucial to develop therapeutic approaches that decrease aging as a key risk factor for cognitive decline. Herein, we present a spatio-temporal brain atlas (15 different regions) of microRNA expression across the mouse lifespan (7 time points) and two aging interventions. MicroRNAs are promising therapeutic targets, as they silence genes by complementary base-pair binding of messenger RNAs and mediate aging speed. We first established sex- and brain-region-specific microRNA expression patterns in young adult samples. Then we focused on sex-dependent and independent brain-region-specific microRNA expression changes during aging. We identified three sex-independent brain aging microRNAs (miR-146a-5p, miR-155-5p, and miR-5100). For miR-155-5p, we showed that these expression changes are driven by aging microglia and target mTOR signaling pathway components and other cellular communication pathways. In this work, we identify strong sex-brain-region-specific aging microRNAs and microglial miR-155-5p as a promising therapeutic target.
Longevity Relevance Analysis
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The paper identifies sex-independent microRNA expression changes during aging, particularly highlighting miR-155-5p as a potential therapeutic target driven by aging microglia. This research is relevant as it explores molecular mechanisms underlying aging, aiming to identify targets that could mitigate age-related cognitive decline.
Tavares, J. F., Liu, D., Talevi, V. ...
· epidemiology
· German Center for Neurodegenerative Diseases (DZNE)
· medrxiv
Several dietary patterns are suggested to benefit health, potentially through DNA methylation changes. However, to what extent adherence to so-called healthy diets overlaps, whether these dietary patterns are equally beneficial, and whether they affect health outcomes through the...
Several dietary patterns are suggested to benefit health, potentially through DNA methylation changes. However, to what extent adherence to so-called healthy diets overlaps, whether these dietary patterns are equally beneficial, and whether they affect health outcomes through the same molecular mechanisms, remains unclear. Therefore, we investigated the overlap in adherence to ten diet quality scores, and examined the associations of these scores with both biological aging markers and DNA methylation profiles. We used data from the Rhineland Study, a large population-based cohort, and validated our findings using corresponding data from the independent EPIC-Potsdam cohort. Interestingly, we found minimal overlap of participants in the top 25% of adherence across different diet quality scores. Adherence to a healthy dietary pattern was associated with reduced epigenetic age acceleration regardless of the specific dietary pattern, except for the EAT-Lancet diet. Different dietary patterns were associated with distinct methylation profiles, which however largely converged onto the same biological pathways. Our research thus indicates that general adherence to a healthy dietary pattern promotes health through similar epigenetic mechanisms, despite variations in dietary composition.
Longevity Relevance Analysis
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Adherence to healthy dietary patterns is associated with reduced epigenetic age acceleration and distinct DNA methylation profiles. This paper is relevant as it explores the relationship between diet quality and biological aging, addressing potential mechanisms that could influence longevity and age-related health outcomes.
Karagiannis, T. T., Chen, Y., Bald, S. ...
· bioinformatics
· Tufts Medical Center
· biorxiv
Despite calls for the development of consensus methods, most analyses of shotgun metagenomics data for microbiome studies use a single taxonomic classifier. In this study, we compare inferences from two broadly used classifiers, MetaPhlAn4 (marker-gene-based) and Kraken2 (k-mer-b...
Despite calls for the development of consensus methods, most analyses of shotgun metagenomics data for microbiome studies use a single taxonomic classifier. In this study, we compare inferences from two broadly used classifiers, MetaPhlAn4 (marker-gene-based) and Kraken2 (k-mer-based), applied to stool metagenomic samples from participants in the Integrative Longevity Omics study to measure associations of taxonomic diversity and relative abundance with age, replicating analyses in an independent cohort. We also introduce consensus and meta-analytic approaches to compare and integrate results from multiple classifiers. While many results are consistent across the two classifiers, we find classifier-specific inferences that would be lost when using one classifier alone. When using a correlated meta-analysis approach across classifiers, differential abundance analysis captures more age-associated taxa, including 17 taxa robustly age-associated across cohorts. This study emphasizes the value of employing multiple classifiers and recommends novel approaches that facilitate the integration of results from multiple methodologies.
Longevity Relevance Analysis
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The paper claims that using multiple taxonomic classifiers in metagenomic analyses can reveal age-associated taxa that would be missed with a single classifier. This is relevant as it addresses the gut microbiome's role in aging and longevity, potentially uncovering insights into the biological mechanisms of aging.
Mahajan, A., Ratti, F., Wang, B. ...
· bioinformatics
· Altos Labs Inc.
· biorxiv
Regulation of gene expression is fundamental for proper cellular function, and is constrained by the local chromatin environment of each gene, which varies spatially along the chromosome and is shaped by epigenetic modifications. Epigenetic modifications induce changes in the loc...
Regulation of gene expression is fundamental for proper cellular function, and is constrained by the local chromatin environment of each gene, which varies spatially along the chromosome and is shaped by epigenetic modifications. Epigenetic modifications induce changes in the local chromatin structure, which can influence gene expression, by affecting the accessibility of DNA to transcription factors. Such changes are particularly relevant in aging and genetic disorders like Hutchinson-Gilford Progeria Syndrome (HGPS) and Werner Syndrome (WRN), where altered chromatin structure contributes to disease pathology. In this study, we analyze RNA-seq data using macroscopic metrics designed to be explicitly sensitive to chromatin modifications. The first metric, intra-chromosomal gene correlation length, measures spatial correlations in gene expressions along the chromosome. The second metric employs an energy landscape model based on the Arrhenius equation to estimate the energetic barriers associated with chromatin state transitions. We apply these metrics to various aging-related datasets, demonstrating their sensitivity to changes in the chromatin structure and the interpretability of the resulting outputs. The intra-chromosomal gene correlation length is particularly effective in quantifying changes in RNA-seq profiles due to increased chromatin accessibility during aging (and conversely, reduced accessibility due to treatment). This metric not only accurately distinguishes cell states, but also provides insight into the direction of aging. For instance, our observations on the effects of anti-sense oligonucleotide (ASO) treatment align with the existing literature, demonstrating that ASO partially restores chromatin structure in diseased cells. They additionally quantify the more pronounced effects in HGPS compared to WRN. The barrier energy landscape further extends this capability by offering a framework for understanding the progressive degradation of the regulatory mechanisms. Together, these metrics provide robust screening tools that enhance our ability to exploit common measurements such as RNA-seq to derive new phenotypes such as chromatin dynamics on aging and disease, offering an alternative perspective that complements traditional analytical techniques and enriches our understanding of cellular states.
Longevity Relevance Analysis
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The paper claims that macroscopic analyses of RNA-seq data can reveal chromatin modifications that influence aging and disease. This research is relevant as it explores the underlying chromatin dynamics associated with aging, potentially addressing root causes of age-related changes rather than merely treating symptoms.
Maity, S., Hassani Najafabadi, A., Kawakita, S. ...
· bioengineering
· Terasaki Institute for Biomedical Innovation, 21100 Erwin St, Woodland Hills, CA 91367, USA
· biorxiv
Immunosenescence dramatically reduces cancer vaccine efficacy in elderly patients, who represent the majority of cancer cases. Despite this clinical reality, age-related immune decline is rarely considered in preclinical testing. Therefore, novel in vitro models to test cancer va...
Immunosenescence dramatically reduces cancer vaccine efficacy in elderly patients, who represent the majority of cancer cases. Despite this clinical reality, age-related immune decline is rarely considered in preclinical testing. Therefore, novel in vitro models to test cancer vaccine efficacy, considering immunosenescence, are needed. Our novel lymph node paracortex on-a-chip (LNPoC) platform addresses this gap by recapitulating age-dependent immune responses against cancer vaccines, specifically antigen presentation, antigen-specific T cell activation, and antitumoral responses. Using this platform, we demonstrated that bone marrow-derived antigen-presenting cells (APCs) from young mice (6-7 weeks) displayed significantly enhanced ovalbumin (OVA) peptide presentation compared to APCs from older mice (35-36 weeks). This age-dependent difference translated to significantly greater OVA-specific CD8+ T cell activation and increased cytotoxicity against B16-OVA cancer cells. These age-dependent differences are unique to our LNPoC and undetectable in traditional 2D cultures, confirming that our LNPoC was more effective than 2D cultures at recapitulating immunosenescence-mediated immune responses against cancer vaccines in vitro. The in vivo validation confirms these findings, as young mice demonstrated higher OVA-specific CD8+ T cell responses and smaller tumors than older mice. Our LNPoC is a valuable tool for assessing immunosenescence\'s impact on cancer vaccines, potentially guiding more effective therapies for older adults.
Longevity Relevance Analysis
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The paper claims that the LNPoC platform effectively models age-dependent immune responses to cancer vaccines, revealing significant differences in T cell activation between young and older mice. This research is relevant as it addresses the impact of immunosenescence on cancer vaccine efficacy, which is a critical aspect of aging and its effects on health outcomes in older adults.
Bruner, K. R., Byington, I. R., Marx, T. J. ...
· physiology
· University of Arizona College of Medicine, Department of Medicine, Division of Endocrinology
· biorxiv
Obesity and type 2 diabetes mellitus accelerate aging, shortening the duration of healthspan. Conversely, chronic calorie restriction (CR) extends healthspan. Research aimed at understanding the mechanism by which CR slows aging has focused heavily on insulin and downstream signa...
Obesity and type 2 diabetes mellitus accelerate aging, shortening the duration of healthspan. Conversely, chronic calorie restriction (CR) extends healthspan. Research aimed at understanding the mechanism by which CR slows aging has focused heavily on insulin and downstream signaling cascades. Glucagon, a hormone that counter-regulates insulin, is commonly affected by these same interventions. To investigate the role of glucagon in aging we used dietary manipulation, global and liver- specific glucagon receptor knockout, and pharmacological glucagon receptor activation. We found that globally eliminating glucagon receptor signaling (Gcgr KO) decreases median lifespan by 35% in lean mice. These lifespan shortening effects are more robust in diet-induced obese mice (54%). Extending these findings to metabolic health, we found that glucagon receptor signaling is indispensable to the metabolic response to chronic CR in young and aged mice. While CR decreased liver fat, serum triglyceride, and serum cholesterol in WT mice, these metabolic benefits were absent in Gcgr KO mice. In line with these observations, we found that critical nutrient sensing pathways known to improve aging are dysregulated in mice lacking glucagon receptor signaling at the liver (Gcgrhep-/-). Liver-specific deletion of the glucagon receptor decreases hepatic AMP Kinase activation in aging mice, regardless of diet. Further, CR decreases hepatic mTOR activity in WT mice, but not in Gcgrhep-/- mice. Together, these findings propose that glucagon signaling plays a critical role in both normal aging and the lifespan and healthspan extension driven by caloric restriction.
Longevity Relevance Analysis
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Glucagon receptor signaling is essential for the metabolic benefits of caloric restriction in aging mice. The study investigates mechanisms that influence aging and healthspan, focusing on glucagon's role in lifespan extension through caloric restriction, which is directly relevant to longevity research.
Blanch, R., Esandi, J., Guerrero-Yagüe, R. ...
· neuroscience
· Universitat Autonoma de Barcelona
· biorxiv
-Klotho is a multifunctional protein widely recognized for its anti-aging and neuroprotective properties. This study investigates the expression and localization of the secreted Klotho (s-KL) isoform in the human brain and its potential role in Alzheimer\'s disease. Using RT-qPCR...
-Klotho is a multifunctional protein widely recognized for its anti-aging and neuroprotective properties. This study investigates the expression and localization of the secreted Klotho (s-KL) isoform in the human brain and its potential role in Alzheimer\'s disease. Using RT-qPCR, we observed that the s-KL transcript predominates over the membrane-bound KL (m-KL) in multiple brain regions, a pattern consistent in macaques and lemurs. Immunohistochemistry and immunoprecipitation assays confirmed the presence of the s-KL protein in human and mouse brain parenchyma, revealing species-specific cellular localization. In human cerebrospinal fluid (CSF), s-KL constitutes ~28% of total KL, with levels significantly reduced in mild dementia-AD patients. These findings underscore s-KL\'s potential neuroprotective role and highlight its differential regulation and expression during AD progression.
Longevity Relevance Analysis
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The study claims that the secreted Klotho isoform (s-KL) is differentially expressed in the brain and cerebrospinal fluid of Alzheimer's disease patients, suggesting a potential neuroprotective role. The research is relevant as it explores the role of Klotho in neuroprotection and its implications for Alzheimer's disease, which is a significant age-related condition.
Friday, May 16, 2025
Patrick Ryan, Jungwoo Lee
· Biomaterials science
· Molecular & Cellular Biology Graduate Program, University of Massachusetts, Amherst, Massachusetts, 01003, USA. [email protected].
· pubmed
A detailed understanding of aging biology and the development of anti-aging therapeutic strategies remain imperative yet inherently challenging due to the protracted nature of aging. Cellular senescence arises naturally through replicative exhaustion and is accelerated by clinica...
A detailed understanding of aging biology and the development of anti-aging therapeutic strategies remain imperative yet inherently challenging due to the protracted nature of aging. Cellular senescence arises naturally through replicative exhaustion and is accelerated by clinical treatments or environmental stressors. The accumulation of senescent cells-defined by a loss of mitogenic potential, resistance to apoptosis, and acquisition of a pro-inflammatory secretory phenotype-has been implicated as a key driver of chronic disease, tissue degeneration, and organismal aging. Recent studies have highlighted the therapeutic promise of senolytic drugs, which selectively eliminate senescent cells. Compelling results from preclinical animal studies and ongoing clinical trials underscore this potential. However, the clinical translation of senolytics requires further pharmacological validation to refine selectivity, minimize toxicity, and determine optimal dosing. Equally important is the evaluation of senolytics' potential to restore tissue structure and function by reducing the senescent cell burden. In vitro tissue culture models offer a powerful platform to advance these efforts. This review summarizes the current landscape of
Longevity Relevance Analysis
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The paper discusses the therapeutic potential of senolytic drugs to eliminate senescent cells and their implications for aging and age-related diseases. This research is relevant as it addresses the root causes of aging by targeting cellular senescence, which is a significant contributor to the aging process and associated chronic diseases.
Venkatasubramanian, R., Darrah, M. A., Mahoney, S. A. ...
· physiology
· University of Colorado Boulder
· biorxiv
Background: Mechanisms underlying Doxorubicin (Doxo) chemotherapy-induced aortic stiffening are incompletely understood. Objectives: Determine the role of cellular senescence and the senescence-associated secretory phenotype (SASP) in mediating Doxo-induced aortic stiffening and ...
Background: Mechanisms underlying Doxorubicin (Doxo) chemotherapy-induced aortic stiffening are incompletely understood. Objectives: Determine the role of cellular senescence and the senescence-associated secretory phenotype (SASP) in mediating Doxo-induced aortic stiffening and the influence of senolytic therapy. Methods: Aortic stiffness (aortic pulse-wave velocity [PWV]), and associated mechanisms were assessed in young adult p16-3MR mice, a model that allows for genetic-based clearance of senescent cells with ganciclovir [GCV]. Young (4-6 month) mice were injected with Doxo and subsequently treated with GCV or the senolytic ABT263. We evaluated the influence of SASP-associated circulating factors in plasma (the circulating SASP milieu) in mediating aortic stiffening ex vivo (aortic elastic modulus) and examined the contribution of glycation stress. Results: Doxo increased aortic PWV (425 vs. control, 353 cm/sec; P<0.05), an effect prevented by both GCV (348 cm/sec) and ABT263 (342 cm/sec; P<0.05 for both vs. Doxo). Plasma from Doxo-treated mice induced aortic stiffening ex vivo (P<0.05 vs. plasma from control mice), whereas plasma from Doxo-GCV and Doxo-ABT263 groups did not. Glycation stress was implicated in SASP-mediated aortic stiffening with Doxo, as inhibition of receptor mediated glycation stress signaling attenuated plasma-induced aortic stiffening. Conclusion: Cellular senescence and the circulating SASP milieu contribute to Doxo-induced aortic stiffening. Senolytics hold promise for preserving aortic stiffening following Doxo exposure.
Longevity Relevance Analysis
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Cellular senescence and the senescence-associated secretory phenotype contribute to Doxorubicin-induced aortic stiffening, and senolytic therapy may mitigate this effect. This paper is relevant as it explores the mechanisms of cellular senescence, a key factor in aging, and suggests potential interventions that could address age-related vascular stiffness.
Komal Pekhale, Vinod Tiwari, Mansoor Hussain ...
· Cell death and differentiation
· DNA repair section, National Institute on Aging, National Institutes of Health, Baltimore, MD, 21224, USA.
· pubmed
Cockayne Syndrome (CS) is a premature aging disorder caused by mutations in the CSA and CSB genes involved in DNA metabolism and other cellular processes. CS patients display many features including premature aging, neurodegeneration, and kidney abnormalities. Nicotinamide dinucl...
Cockayne Syndrome (CS) is a premature aging disorder caused by mutations in the CSA and CSB genes involved in DNA metabolism and other cellular processes. CS patients display many features including premature aging, neurodegeneration, and kidney abnormalities. Nicotinamide dinucleotide (NAD
Longevity Relevance Analysis
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The paper claims that Cockayne syndrome mice exhibit defects in de novo NAD biosynthesis, which reflects human kidney disease. This research is relevant as it explores the underlying mechanisms of a premature aging disorder, potentially linking NAD metabolism to aging processes.
Tabea Schoeler, Jean-Baptiste Pingault, Zoltán Kutalik
· Aging
· Department of Computational Biology, University of Lausanne, Lausanne, Switzerland. [email protected].
· pubmed
Large-scale genomic studies focusing on the genetic contribution to human aging have mostly relied on cross-sectional data. With the release of longitudinally curated aging phenotypes by the UK Biobank (UKBB), it is now possible to study aging over time at genome-wide scale. In t...
Large-scale genomic studies focusing on the genetic contribution to human aging have mostly relied on cross-sectional data. With the release of longitudinally curated aging phenotypes by the UK Biobank (UKBB), it is now possible to study aging over time at genome-wide scale. In this work, we evaluated the suitability of competing models of change in realistic simulation settings, performed genome-wide association scans on simulation-validated measures of age-related deweekcline, and followed up with LD-score regression and Mendelian Randomization (MR) analyses. Focusing on global cognitive and physical function, we observed marked differences between baseline function (θ) and accelerated decline (Δ). Both outcomes showed distinct heritability levels (e.g., 31.38%
Longevity Relevance Analysis
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The paper claims to identify genetic determinants of cognitive and physical decline using longitudinal genomic approaches. This research is relevant as it explores the genetic factors contributing to aging-related declines, which could inform strategies for longevity and age-related disease prevention.
Mullis, M. N., Lefebvre, A. E. Y. T.-S., Sivasubramanian, K. ...
· genetics
· Calico Life Sciences, LLC
· biorxiv
Diversity Outbred (DO) mice are a powerful model system for mapping complex traits due to their high genetic diversity and mapping resolution. However, while there are extensive tools available for standard genetic analysis in DO mice, fewer techniques have been implemented to fa...
Diversity Outbred (DO) mice are a powerful model system for mapping complex traits due to their high genetic diversity and mapping resolution. However, while there are extensive tools available for standard genetic analysis in DO mice, fewer techniques have been implemented to facilitate integrated, cross-study analysis. Here, we implement Haseman-Elston regression to estimate genetic correlations among 7,233 phenotypes measured across eleven independent DO mouse studies. We used this network of genetic correlations to cluster phenotypes according to shared genetics, which enhanced the power to detect quantitative trait loci (QTL). This approach empowered the detection of 884 QTL for 383 meta-phenotypes, explaining an average of 40.36% of the total genetic variance per mega-analysis. We leveraged this network for insights into specific areas of biology, including lifespan, frailty, immune composition, histological and functional lung phenotypes, and histological phenotypes of the aorta. We found the genetics of lifespan to share limited correlation with the genetics of frailty but stronger correlation with the genetics of immune cell composition. Additionally, mega-analyses driven by genetic correlations identified candidate genes (e.g. Cdkn2b) associated with degraded extracellular matrix in the aorta. Finally, an ensemble of genetic analyses implicated pulmonary neuroendocrine cell signaling and/or differentiation as a key driver of multiple lung pathophenotypes.
Longevity Relevance Analysis
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The paper identifies genetic correlations and candidate genes associated with age-related pathologies in DO mice. The research provides insights into the genetic underpinnings of aging-related traits, which could contribute to understanding the mechanisms of aging and potential interventions.
Wang, S., Liu, X., He, J. ...
· neuroscience
· Peking University Sixth Hospital
· biorxiv
The default mode network (DMN) critically underpins cognitive and affective functions throughout the adult lifespan; however, detailed insights into its complex neuroarchitecture and connectivity patterns across aging remain limited. Leveraging the open-access CamCAN dataset, com...
The default mode network (DMN) critically underpins cognitive and affective functions throughout the adult lifespan; however, detailed insights into its complex neuroarchitecture and connectivity patterns across aging remain limited. Leveraging the open-access CamCAN dataset, comprising structural and diffusion magnetic resonance imaging (MRI) alongside magnetoencephalography (MEG) data from 599 adults spanning ages 18 to 88 years, we systematically investigated age-associated changes in multimodal connectomes within the DMN. Our analyses revealed a progressive decline in both structural and functional connectivity among DMN subregions with advancing age. Additionally, MEG-based connectivity assessment demonstrated age-related decreases in high-frequency oscillatory activity (alpha, beta, gamma bands) accompanied by increases in low-frequency oscillations (theta band). Integrating structural data with neurophysiological measures further revealed age-dependent shifts in neurophysiological-structural coupling within the prefrontal cortex, characterized by strengthened coupling at theta frequencies but weakened coupling at higher frequencies. Conversely, coupling within the posterior cingulate cortex consistently declined across all examined frequency bands. Notably, theta-band coupling within the prefrontal cortex significantly correlated with age-related memory performance variations. Collectively, our findings delineate nuanced changes in DMN information transmission dynamics across adulthood, underscoring its promise as a neurobiological biomarker reflective of cognitive aging heterogeneity.
Longevity Relevance Analysis
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The paper claims that age-related changes in the default mode network's connectivity patterns are associated with cognitive aging. This research is relevant as it explores the neurobiological underpinnings of cognitive decline across the adult lifespan, contributing to our understanding of aging processes.
Sturgill, S. L., Aidja, M., Hu, B. ...
· physiology
· The Ohio State University
· biorxiv
Background: Cardiovascular disease (CVD) is the leading cause of global mortality, with recent increases attributed to demographic shifts in age and rising rates of obesity. Diminished contractile reserve is a hallmark of a diseased heart; assessing contractile reserve is pivotal...
Background: Cardiovascular disease (CVD) is the leading cause of global mortality, with recent increases attributed to demographic shifts in age and rising rates of obesity. Diminished contractile reserve is a hallmark of a diseased heart; assessing contractile reserve is pivotal in prognosticating and monitoring CVD progression. The Frank-Starling mechanism and sympathetic stimulation are key to enhance contractile reserve but have not been explored in vivo in old and obese mouse models of CVD. This project aims to use speckle tracking echocardiography (STE) to characterize the function of the heart at baseline, with increased preload, and with sympathetic stimulation. We hypothesize that along with blunted systolic function, diastolic function, and contractility, old and obese mice will have a blunted contractile reserve. Methods: STE was obtained for control (4-month-old), aged (24-month-old), and obese mice (high fat diet-induced). Mice received an intravenous injection of 150L saline to increase preload to assess the Frank-Starling response, followed by injection of {beta}1adrenergic receptor agonist dobutamine to assess sympathetic response. Results: At baseline, aging and obese mice demonstrated blunted systolic, diastolic function, and contractility. Endocardial and epicardial wall displacement differed between aging and obese mice with contractile reserve, indicating that they have functionally distinct cardiac phenotypes. Conclusions: This study is the first to demonstrate blunted systolic function, diastolic function, and contractility through STE in aging and obese mice. Our novel method for investigating the contractile reserve of mice demonstrated aging and obese mice have dissimilar responses when assessing contractile reserve, which could contribute to their distinct functional phenotypes.
Longevity Relevance Analysis
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Old and obese mice exhibit distinct cardiac phenotypes with blunted contractile reserve compared to younger controls. This study is relevant as it explores the functional differences in cardiac physiology related to aging and obesity, which are critical factors in understanding age-related diseases and potential interventions for longevity.
Pan Liu, Qi Wang, Shuimiao Wang ...
· Aging cell
· Department of Ophthalmology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
· pubmed
Aging is associated with increased retinal cell apoptosis, which contributes to decreases in retinal function. Apoptotic retinal cell clearance relies on microglial efferocytosis, but the impact of aging on this process has not been fully elucidated. In this study, we aimed to sh...
Aging is associated with increased retinal cell apoptosis, which contributes to decreases in retinal function. Apoptotic retinal cell clearance relies on microglial efferocytosis, but the impact of aging on this process has not been fully elucidated. In this study, we aimed to shed light on this by using single-cell RNA sequencing (sc-RNA-seq) to compare young and aged mouse retinal transcriptional profiles, in which 74,412 retinal cells from young and aged mice were classified into 10 transcriptionally distinct retinal cell types, and differentially expressed genes between young versus aged retinas were mainly associated with cellular senescence and apoptosis. Furthermore, ligand-receptor interactions (e.g., AXL-GAS6, MERTK-GAS6) between microglia and other retinal cells were strengthened in aged, compared to young retinas. Additionally, among microglia, Subcluster 4 was found under partial clustering to be associated with efferocytosis, of which aged microglia had downregulated efferocytosis-associated genes. The impact of aging on microglial efferocytosis was further verified in vitro by doxorubicin (DOX)-induced senescent BV2 microglia, and in vivo by a retinal ischemia/reperfusion (I/R) injury mouse model. In vitro, DOX-treated BV2 microglia had significantly lowered efferocytosis, as well as efferocytosis-related MerTK and Axl protein expression; this was also present in vivo in aged retinas post-I/R injury, with increased co-localization of ionized calcium-binding adapter molecule 1
Longevity Relevance Analysis
(4)
The paper claims that aging impairs microglial efferocytosis, leading to increased apoptotic cell accumulation in the retina. This research addresses a mechanism related to aging and cellular senescence, which is crucial for understanding age-related decline in retinal function and potential interventions.
Laboy, R., Ndoci, M., Tabrez, S. S. ...
· cell biology
· Max Planck Institute for Biology of Ageing
· biorxiv
The transcriptional complex Mondo/Max-like, MML-1/MXL-2, acts as a convergent transcriptional regulatory output of multiple longevity pathways in Caenorhabditis elegans. These transcription factors coordinate nutrient sensing with carbohydrate and lipid metabolism across the evol...
The transcriptional complex Mondo/Max-like, MML-1/MXL-2, acts as a convergent transcriptional regulatory output of multiple longevity pathways in Caenorhabditis elegans. These transcription factors coordinate nutrient sensing with carbohydrate and lipid metabolism across the evolutionary spectrum. While most studies have focused on the downstream outputs, little is known about the upstream inputs that regulate these transcription factors in a live organism. Here, we found that knockdown of various glucose metabolic enzymes decreases MML-1 localization in the nucleus and identified two hexokinase isozymes, hxk-1 and hxk-2, as the most vigorous regulators of MML-1 function. Upon hexokinase knockdown, MML-1 redistributes to mitochondria and lipid droplets (LD) and concomitantly, transcriptional targets are downregulated and germline longevity is abolished. Further, we found that hxk-1 regulates MML-1 through mitochondrial {beta}oxidation, while hxk-2 regulates MML-1 by modulating the pentose phosphate pathway (PPP) and its coordinated association with lipid droplets. Similarly, inhibition of the PPP rescues mammalian MondoA nuclear translocation and transcriptional function upon starvation. These studies reveal how metabolic signals and organellar communication regulate a key convergent metabolic transcription factor to promote longevity.
Longevity Relevance Analysis
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Hexokinase isozymes regulate the transcription factor MML-1, which is crucial for longevity in C. elegans through metabolic pathways. The study addresses upstream regulatory mechanisms that influence longevity, contributing to the understanding of metabolic control in aging.
Natalie Stanley, Luvna Dhawka, Sneha Jaikumar ...
· Aging cell
· Department of Computer Science and Computational Medicine Program, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
· pubmed
"Biological aging clocks"-composite molecular markers thought to capture an individual's biological age-have been traditionally developed through bulk-level analyses of mixed cells and tissues. However, recent evidence highlights the importance of gaining single-cell-level insigh...
"Biological aging clocks"-composite molecular markers thought to capture an individual's biological age-have been traditionally developed through bulk-level analyses of mixed cells and tissues. However, recent evidence highlights the importance of gaining single-cell-level insights into the aging process. Microglia are key immune cells in the brain shown to adapt functionally in aging and disease. Recent studies have generated single-cell RNA-sequencing (scRNA-seq) datasets that transcriptionally profile microglia during aging and development. Leveraging such datasets in humans and mice, we develop and compare computational approaches for generating transcriptome-wide summaries from microglia to establish robust and applicable aging clocks. Our results reveal that unsupervised, frequency-based summarization approaches, which encode distributions of cells across molecular subtypes, strike a balance in accuracy, interpretability, and computational efficiency. Notably, our computationally derived microglia markers achieve strong accuracy in predicting chronological age across three diverse single-cell datasets, suggesting that microglia exhibit characteristic changes in gene expression during aging and development that can be computationally summarized to create robust markers of biological aging. We further extrapolate and demonstrate the applicability of single-cell-based microglia clocks to readily available bulk RNA-seq data with an environmental input (early life stress), indicating the potential for broad utility of our models across genomic modalities and for testing hypotheses about how environmental inputs affect brain age. Such single-cell-derived markers can yield insights into the determinants of brain aging, ultimately promoting interventions that beneficially modulate health and disease trajectories.
Longevity Relevance Analysis
(5)
The paper claims that single-cell RNA-sequencing of microglia can establish robust markers of biological aging. This research is relevant as it addresses the biological mechanisms of aging and proposes a method to quantify aging at the cellular level, which could lead to interventions that modulate health and disease trajectories.
Lu, Z., Zhang, Z., Xu, Z. ...
· genomics
· The Rockefeller University
· biorxiv
Aging leads to functional decline across tissues, often accompanied by profound changes in cellular composition and cell-intrinsic molecular states. However, a comprehensive catalog of how the population of individual cell types change with age and the associated epigenomic dynam...
Aging leads to functional decline across tissues, often accompanied by profound changes in cellular composition and cell-intrinsic molecular states. However, a comprehensive catalog of how the population of individual cell types change with age and the associated epigenomic dynamics is lacking. Here, we constructed a single-cell chromatin accessibility atlas consisting of ~7 million cells from 21 tissue types spanning three age groups in both sexes. This dataset revealed 536 main cell types and 1,828 finer-grained subtypes, defined by unique chromatin accessibility landscapes at ~1.3 million cis-regulatory elements. We observed widespread remodeling of immune lineages, with increases in plasma cells and macrophages, and depletion of T and B cell progenitors. Additionally, non-immune cell populations, including kidney podocytes, ovary granulosa cells, muscle tenocytes and lung aerocytes, showed marked reductions with age. Meanwhile, many subtypes changed synchronously across multiple organs, underscoring the potential influence of systemic inflammatory signals or hormonal cues. At the molecular level, aging was marked by thousands of differentially accessible regions, with the most concordant changes shared across cell types linked to genes related to inflammation or development. Putative upstream factors, such as intrinsic shifts in transcription factor usages and extrinsic cytokine signatures, were identified. Notably, around 40% of aging-associated main cell types and subtypes showed sex-dependent differences, with tens of thousands of chromatin accessibility peaks altered exclusively in one sex. Together, these findings present a comprehensive framework of how aging reshapes the chromatin landscape and cellular composition across diverse tissues, offering a comprehensive resource for understanding the molecular and cellular programs underlying aging and supporting the exploration of targeted therapeutic strategies to address age-related dysfunction.
Longevity Relevance Analysis
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The paper presents a comprehensive atlas of cellular dynamics and epigenomic changes associated with aging across multiple tissues. This research is relevant as it addresses the fundamental biological processes underlying aging, which could inform strategies for lifespan extension and the treatment of age-related dysfunctions.
Sedore, C. A., Segerdell, E., Coleman-Hulbert, A. L. ...
· physiology
· University of Oregon
· biorxiv
Sulforaphane, an organosulfur isothiocyanate derived from cruciferous vegetables, has been shown to inhibit inflammation, oxidative stress, and cancer cell growth. To explore the potential of sulforaphane as a candidate natural compound for promoting longevity more generally, we ...
Sulforaphane, an organosulfur isothiocyanate derived from cruciferous vegetables, has been shown to inhibit inflammation, oxidative stress, and cancer cell growth. To explore the potential of sulforaphane as a candidate natural compound for promoting longevity more generally, we tested the dose and age-specific effects of sulforaphane on C. elegans longevity, finding that it can extend lifespan by more than 50% at the most efficacious doses, but that treatment must be initiated early in life to be effective. We then created a novel, gene-specific, transcriptional aging clock, which demonstrated that sulforaphane-treated individuals exhibited a "transcriptional age" that was approximately four days younger than age-matched controls, representing a nearly 20% reduction in biological age. The clearest transcriptional responses were detoxification pathways, which, together with the shape of the dose-response curve, indicates a likely hormetic response to sulforaphane. These results support the idea that robust longevity-extending interventions can act via global effects across the organism, as revealed by systems level changes in gene expression.
Longevity Relevance Analysis
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Sulforaphane extends lifespan in C. elegans by slowing the transcriptional aging clock. The study investigates a natural compound's potential to promote longevity by addressing the biological mechanisms of aging rather than merely treating age-related diseases.
Richard Oppong, Valeria Orru, Michele Marongiu ...
· Journal of the American Heart Association
· National Institute on Aging - Intramural Research Program NIH Baltimore MD.
· pubmed
Growth differentiation factor 15 (GDF-15) levels are emerging as a candidate biomarker of aging. The present study aimed to: (1) characterize the association of GDF-15 with the continuum of arterial stiffening, assessed as carotid-femoral pulse wave velocity, as age increases; (2...
Growth differentiation factor 15 (GDF-15) levels are emerging as a candidate biomarker of aging. The present study aimed to: (1) characterize the association of GDF-15 with the continuum of arterial stiffening, assessed as carotid-femoral pulse wave velocity, as age increases; (2) determine the predictive role of serum GDF-15 levels on mortality; and (3) identify genetic determinants of serum GDF-15 levels.
Longevity Relevance Analysis
(4)
The study claims that higher levels of GDF-15 correlate with increased arterial stiffness and predict all-cause mortality. This paper is relevant as it investigates a potential biomarker (GDF-15) associated with aging and its implications for mortality, contributing to the understanding of aging mechanisms.
Lauren J Donovan, Chelsie L Brewer, Sabrina F Bond ...
· Nature neuroscience
· Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Stanford, CA, USA. [email protected].
· pubmed
Aging negatively impacts central nervous system function; however, there is limited information about the cellular impact of aging on peripheral nervous system function. Importantly, injury to vulnerable peripheral axons of dorsal root ganglion (DRG) neurons results in somatosens...
Aging negatively impacts central nervous system function; however, there is limited information about the cellular impact of aging on peripheral nervous system function. Importantly, injury to vulnerable peripheral axons of dorsal root ganglion (DRG) neurons results in somatosensory dysfunction, such as pain, at higher rates in aged individuals. Cellular senescence is common to both aging and injury and contributes to the aged pro-inflammatory environment. We discovered DRG neuron senescence in the context of aging and pain-inducing peripheral nerve injury in young (~3 months) and aged (~24 months) male and female mice. Senescent neurons were dynamic and heterogeneous in their expression of multiple senescence markers, including pro-inflammatory factor IL6. Senescence marker-expressing neurons had nociceptor-like profiles, included high-firing phenotypes and displayed increased excitability after IL6 application. Furthermore, elimination of senescent cells resulted in improvement of nociceptive behaviors in nerve-injured mice. Finally, male and female post-mortem human DRG contained senescent neurons that increased with age (~32 years old versus 65 years old). Overall, we describe a susceptibility of the peripheral nervous system to neuronal senescence-a potential targetable mechanism to treat sensory dysfunction, such as chronic pain, particularly in aged populations.
Longevity Relevance Analysis
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The paper claims that neuronal senescence in dorsal root ganglia contributes to sensory dysfunction in aged individuals and can be targeted for treatment. This research addresses a mechanism related to aging and proposes a potential intervention, making it relevant to longevity research.
Kai Wang, Jianing Liu
· Scientific reports
· Medical School, Southeast University, Nanjing, China.
· pubmed
This study investigated the impact of anti-aging protein α-Klotho on cardiometabolic diseases (CMDs) among middle-aged and elderly population. A total of 11,198 participants aged 40-79 years were included in the National Health and Nutrition Examination Survey (NHANES) spanning 2...
This study investigated the impact of anti-aging protein α-Klotho on cardiometabolic diseases (CMDs) among middle-aged and elderly population. A total of 11,198 participants aged 40-79 years were included in the National Health and Nutrition Examination Survey (NHANES) spanning 2007-2016. Serum α-Klotho levels were quantified via enzyme-linked immunosorbent assays. CMDs comprised cardiovascular disease (CVD), and four metabolic disorders: type 2 diabetes (T2DM), obesity, chronic kidney disease (CKD), and non-alcoholic fatty liver disease (NAFLD). Weighted logistic regression analysis, subgroup analysis, mediation analysis, restricted cubic splines (RCS), and Cox proportional hazards regression analysis were used. α-Klotho exhibited negative associations with each single CMD except T2DM, and RCS showed U-shape and L-shape dose-response relationships of α-Klotho with risk of T2DM and CKD, respectively. Ordered logistic regression analysis revealed that higher levels of Klotho markedly reduced the cumulative number of metabolic comorbidities complicating CVD (OR 0.56 (0.35, 0.91)). Simple mediation analysis showed CKD may explain up to 20.42% of the association between Klotho and CVD. Notably, α-Klotho's association with cardiometabolic comorbidities was particularly evident among individuals who were widowed/divorced/separated, non-Hispanic Black, lower-income, or less educated, with hypertension, current smokers, lower leisure and commuting physical activity, but higher work-related physical activity. Regarding long-term effects, higher α-Klotho levels were associated with lower all-cause mortality among participants with CMDs, but not among those without CMDs. Higher α-Klotho levels were associated with lower CMD prevalence, particularly in high-risk cardiovascular populations with lower socioeconomic status and unfavorable lifestyles and reduced all-cause mortality risk among CMD patients.
Longevity Relevance Analysis
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Higher levels of α-Klotho are associated with reduced prevalence of cardiometabolic diseases and lower all-cause mortality among affected individuals. The study addresses the role of an anti-aging protein in mitigating age-related diseases and their comorbidities, which is pertinent to longevity research.
Hao Xiong, Pan Shen, Qinghua Luo ...
· Clinical genetics
· Department of Clinical Medicine, Jiangxi University of Chinese Medicine, Nanchang, China.
· pubmed
The genetic architecture underlying traits related to Human Musculoskeletal System Aging (MSA) remains largely unexplored. In this study, we conducted a large-scale multivariate genome-wide association study (GWAS) of MSA utilizing Genomic Structural Equation Modeling (Genomic SE...
The genetic architecture underlying traits related to Human Musculoskeletal System Aging (MSA) remains largely unexplored. In this study, we conducted a large-scale multivariate genome-wide association study (GWAS) of MSA utilizing Genomic Structural Equation Modeling (Genomic SEM). We estimated causal single nucleotide polymorphisms (SNPs) associated with independent variation and identified 14 genome-wide significant loci (mean.PP > 0.95). We employed multiple transcriptome-wide association methods to analyze tissue, cellular levels, and genomic elements, identifying loci with high relevance to MSA susceptibility, along with associated element information. Our research represents the first comprehensive delineation of the genetic architecture of Musculoskeletal System Aging through a GWAS of unmeasured phenotype.
Longevity Relevance Analysis
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The paper identifies genetic loci associated with musculoskeletal system aging through a genome-wide association study. This research is relevant as it explores the genetic underpinnings of aging-related traits, potentially contributing to understanding the biological mechanisms of aging.
Nancy Adam, Yang Yang, Mahbod Djamshidi ...
· Aging cell
· Robson DNA Science Centre, Arnie Charbonneau Cancer Institute, Departments of Biochemistry & Molecular Biology and/or Oncology, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada.
· pubmed
Replicative senescence occurs in response to shortened telomeres and is triggered by ATM and TP53-mediated DNA damage signaling that blocks replication. hTERT lengthens telomeres, which is thought to block damage signaling and the onset of senescence. We find that normal diploid ...
Replicative senescence occurs in response to shortened telomeres and is triggered by ATM and TP53-mediated DNA damage signaling that blocks replication. hTERT lengthens telomeres, which is thought to block damage signaling and the onset of senescence. We find that normal diploid fibroblasts expressing hTERT mutants unable to maintain telomere length do not initiate DNA damage signaling and continue to replicate, despite having telomeres shorter than senescent cells. The TRF1 and TRF2 DNA binding proteins of the shelterin complex stabilize telomeres, and we find that expression of different mutant hTERT proteins decreases levels of the Siah1 E3 ubiquitin ligase that targets TRF2 to the proteasome, by increasing levels of the CDC20 and FBXO5 E3 ligases that target Siah1. This restores the TRF2:TRF1 ratio to block the activation of ATM and subsequent activation of TP53 that is usually associated with DNA damage-induced senescence signaling. All hTERT variants reduce DNA damage signaling, and this occurs concomitantly with telomeres assuming a more compact, denser conformation than senescent cells as measured by super-resolution microscopy. This indicates that hTERT variants induce TRF2-mediated telomere compaction that is independent of telomere length, and it plays a dominant role in regulating the DNA damage signaling that induces senescence and blocks replication of human fibroblasts. These observations support the idea that very short telomeres often seen in cancer cells may fail to induce senescence due to selective stabilization of components of the shelterin complex, increasing telomere density, rather than maintaining telomere length via the reverse transcriptase activity of hTERT.
Longevity Relevance Analysis
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The paper claims that hTERT variants can induce TRF2-mediated telomere compaction independent of telomere length, thereby blocking DNA damage signaling and extending cell replicative lifespan. This research addresses mechanisms that could potentially bypass cellular senescence, which is a fundamental aspect of aging and longevity.
Hao Hu, Tianhao Gao, Jingwei Zhao ...
· Glia
· Wolfson Institute for Biomedical Research, Division of Medicine, Faculty of Medical Sciences, University College London, London, UK.
· pubmed
Oligodendrogenesis and myelin formation are important processes in the central nervous system (CNS) of jawed vertebrates, underpinning the highly efficient neural computation within the compact CNS architecture. Myelin, the dense lipid sheath wrapped around axons, enables rapid s...
Oligodendrogenesis and myelin formation are important processes in the central nervous system (CNS) of jawed vertebrates, underpinning the highly efficient neural computation within the compact CNS architecture. Myelin, the dense lipid sheath wrapped around axons, enables rapid signal transmission and modulation of neural circuits. Oligodendrocytes are generated from oligodendrocyte precursor cells (OPCs), which are widely distributed in the adult CNS and continue to produce new oligodendrocytes throughout life. Adult oligodendrogenesis is integral to adaptive myelination, which fine-tunes neural circuits in response to neuronal activity, contributing to neuroplasticity, learning, and memory. Emerging evidence also highlights the role of oligodendrogenesis in specialized brain regions, linking oligodendrocytes to metabolic and homeostatic functions. In the aging and diseased brain, dysregulated oligodendrogenesis exacerbates myelin loss and may contribute to pathogenesis. In addition, maladaptive myelination driven by aberrant neuronal activity could sustain a dysfunction in conditions such as epilepsy. This review summarizes the current understanding of oligodendrogenesis, with insights into its evolution, regulation, and impact on aging and disease.
Longevity Relevance Analysis
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Oligodendrogenesis plays a crucial role in neuroplasticity and may be linked to age-related cognitive decline. The paper discusses mechanisms that could influence aging processes and neurodegeneration, making it relevant to longevity research.
Pedro P Cunha, Mariana Lopes
· Cellular reprogramming
· Centre for Innovative Biomedicine and Biotechnology, University of Coimbra, Coimbra, Portugal.
· pubmed
By dissecting metabolic and epigenetic features imposed by ageing in cardiomyocyte conversion from fetal and adult mouse fibroblasts, Santos et al. describe that metabolic modulation can enhance direct cardiac reprogramming.
By dissecting metabolic and epigenetic features imposed by ageing in cardiomyocyte conversion from fetal and adult mouse fibroblasts, Santos et al. describe that metabolic modulation can enhance direct cardiac reprogramming.
Longevity Relevance Analysis
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Metabolic modulation can enhance direct cardiac reprogramming in the context of age-related metabolic barriers. This research addresses the underlying metabolic and epigenetic factors associated with aging, which are crucial for advancing our understanding of rejuvenation strategies in cardiac tissue.
Yizhong Zhang, Arshia Naaz, Trishia Yi Ning Cheng ...
· Communications biology
· Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
· pubmed
Aging is a multifaceted biological process marked by the decline in both mitotic and postmitotic cellular function, often central to the development of age-related diseases. In the pursuit of slowing or even reversing the aging process, a prominent strategy of significant interes...
Aging is a multifaceted biological process marked by the decline in both mitotic and postmitotic cellular function, often central to the development of age-related diseases. In the pursuit of slowing or even reversing the aging process, a prominent strategy of significant interest is calorie restriction (CR), also known as dietary restriction, and the potential influence of a drug called rapamycin (RM). Both CR and RM have demonstrated the capacity to extend healthspan and lifespan across a diverse array of species, including yeast, worms, flies, and mice. Nevertheless, their individual and combined effects on mitotic and postmitotic cells, as well as their comparative analysis, remain areas that demand a thorough investigation. In this study, we employ RNA-sequencing methodologies to comprehensively analyze the impact of CR, RM, and their combination (CR + RM) on gene expression in yeast cells. Our analysis uncovers distinctive, overlapping, and even contrasting patterns of gene regulation, illuminating the unique and shared effects of CR and RM. Furthermore, the transcriptional synergistic interaction of CR + RM is validated in extending the lifespan of both yeast and human cells.
Longevity Relevance Analysis
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The paper claims that calorie restriction and rapamycin have a synergistic effect on extending cellular lifespan through specific gene expression changes. This research is relevant as it investigates potential interventions that target the biological mechanisms of aging, rather than merely addressing age-related diseases.
Sina Shadfar, Fabiha Farzana, Sayanthooran Saravanabavan ...
· Aging cell
· Motor Neuron Disease Research Centre, Macquarie Medical School, Faculty of Medicine, Health and Human Sciences, Macquarie University, Sydney, New South Wales, Australia.
· pubmed
DNA damage is a serious threat to cellular viability, and it is implicated as the major cause of normal ageing. Hence, targeting DNA damage therapeutically may counteract age-related cellular dysfunction and disease, such as neurodegenerative conditions and cancer. Identifying no...
DNA damage is a serious threat to cellular viability, and it is implicated as the major cause of normal ageing. Hence, targeting DNA damage therapeutically may counteract age-related cellular dysfunction and disease, such as neurodegenerative conditions and cancer. Identifying novel DNA repair mechanisms therefore reveals new therapeutic interventions for multiple human diseases. In neurons, non-homologous end-joining (NHEJ) is the only mechanism available to repair double-stranded DNA breaks (DSB), which is much more error prone than other DNA repair processes. However, there are no therapeutic interventions to enhance DNA repair in diseases affecting neurons. NHEJ is also a useful target for DNA repair-based cancer therapies to selectively kill tumour cells. Protein disulphide isomerase (PDI) participates in many diseases, but its roles in these conditions remain poorly defined. PDI exhibits both chaperone and redox-dependent oxidoreductase activity, and while primarily localised in the endoplasmic reticulum it has also been detected in other cellular locations. We describe here a novel role for PDI in DSB repair following at least two types of DNA damage. PDI functions in NHEJ, and following DNA damage, it relocates to the nucleus, where it co-localises with critical DSB repair proteins at DNA damage foci. A redox-inactive mutant of PDI lacking its two active site cysteine residues was not protective, however. Hence, the redox activity of PDI mediates DNA repair, highlighting these cysteines as targets for therapeutic intervention. The therapeutic potential of PDI was also confirmed by its protective activity in a whole organism against DNA damage induced in vivo in zebrafish. Hence, harnessing the redox function of PDI has potential as a novel therapeutic target against DSB DNA damage relevant to several human diseases.
Longevity Relevance Analysis
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The paper claims that the redox activity of protein disulphide isomerase (PDI) mediates DNA repair through non-homologous end-joining, highlighting its potential as a therapeutic target against DNA damage. This research is relevant as it addresses a fundamental mechanism of DNA repair, which is crucial for counteracting age-related cellular dysfunction and diseases, thereby targeting a root cause of aging.
Hilpert, D. C., Haseeb, M. A., Bickel, S. E.
· cell biology
· Dartmouth College
· biorxiv
Meiotic segregation errors in human oocytes are the leading cause of miscarriages and trisomic pregnancies and their frequency increases exponentially for women in their thirties. One factor that contributes to increased segregation errors in aging oocytes is premature loss of si...
Meiotic segregation errors in human oocytes are the leading cause of miscarriages and trisomic pregnancies and their frequency increases exponentially for women in their thirties. One factor that contributes to increased segregation errors in aging oocytes is premature loss of sister chromatid cohesion. However, the mechanisms underlying age-dependent deterioration of cohesion are not well-defined. Autophagy, a cellular degradation process critical for cellular homeostasis, is known to decline with age in various organisms and cell types. Here we quantify basal autophagy in Drosophila oocytes and use GAL4/UAS inducible knockdown to ask whether disruption of autophagy in prophase oocytes impacts the fidelity of chromosome segregation. We find that individual knockdown of autophagy proteins in Drosophila oocytes during meiotic prophase causes a significant increase in segregation errors. In addition, Atg8a knockdown in prophase oocytes leads to premature loss of arm cohesion and missegregation of recombinant homologs during meiosis I. Using an oocyte aging paradigm that we have previously described, we show that basal autophagy decreases significantly when Drosophila oocytes undergo aging. Our data support the model that a decline in autophagy during oocyte aging contributes to premature loss of meiotic cohesion and segregation errors.
Longevity Relevance Analysis
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The paper claims that a decline in basal autophagy during oocyte aging contributes to premature loss of meiotic cohesion and segregation errors. This research is relevant as it explores the mechanisms underlying age-related cellular deterioration, specifically in the context of oocyte aging, which is a critical aspect of reproductive aging and its implications for fertility and genetic integrity.
Yun Zhang, Ying Wei, Xuejie Han ...
· Gut microbes
· Department of Cardiology, The First Affiliated Hospital, Harbin Medical University, Harbin, China.
· pubmed
Aging is a primary driver of the escalating prevalence of heart failure (HF). Age-associated gut microbiota dysbiosis has been implicated in various age-related diseases, yet its role in age-related HF remains largely unexplored. In this study, we sought to explore the potential ...
Aging is a primary driver of the escalating prevalence of heart failure (HF). Age-associated gut microbiota dysbiosis has been implicated in various age-related diseases, yet its role in age-related HF remains largely unexplored. In this study, we sought to explore the potential link between age-related gut microbiota alterations and HF in the elderly. We analyzed a publicly available single-cell sequencing dataset, which revealed markedly increased ferroptosis activity in cardiac myocytes of elderly individuals compared to their younger counterparts. Notably, treatment with the ferroptosis inhibitor, ferrostatin-1, mitigated cardiac ferroptosis and prevented cardiac dysfunction in aging rats. Furthermore, fecal microbiota transplantation from elderly HF patients significantly increased cardiac ferroptosis activity and induced cardiac dysfunction in healthy recipient rats. Integrated 16S rRNA sequencing and PCR quantification revealed a marked depletion of
Longevity Relevance Analysis
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Faecalibacterium prausnitzii prevents age-related heart failure by suppressing ferroptosis in cardiomyocytes through butyrate-mediated LCN2 regulation. The paper explores the link between gut microbiota alterations and age-related heart failure, addressing a potential root cause of aging-related cardiac dysfunction.
Del Mauro, G., Zeng, X., Wang, Z.
· neuroscience
· University of Maryland School of Medicine
· biorxiv
Brain entropy (BEN), a measure of the complexity and irregularity of neural has emerged as a promising marker for cognitive and clinical traits. However, normative lifespan trajectories of BEN remain underexplored. In this study, we investigated age-related changes in BEN across ...
Brain entropy (BEN), a measure of the complexity and irregularity of neural has emerged as a promising marker for cognitive and clinical traits. However, normative lifespan trajectories of BEN remain underexplored. In this study, we investigated age-related changes in BEN across the human lifespan using Sample Entropy (SampEn). BEN was estimated from resting-state fMRI data collected from multiple Human Connectome Project cohorts (N = 2,415, ages 8-89 years), and normative growth curves were modeled using the GAMLSS framework. Results revealed a nonlinear increase in average BEN from childhood to older adulthood, with females exhibiting significantly higher BEN than males. Regional and network-level analyses confirmed similar age-related patterns.
Longevity Relevance Analysis
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The study claims that brain entropy increases nonlinearly from childhood to older adulthood, with notable differences between genders. This research is relevant as it explores normative brain changes across the lifespan, which could provide insights into cognitive aging and potential interventions for age-related cognitive decline.
Ana Luiza Drumond-Bock, Harris E Blankenship, Kevin D Pham ...
· eNeuro
· Aging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, 73104.
· pubmed
The consequences of aging can vary dramatically between different brain regions and cell types. In the ventral midbrain, dopaminergic neurons develop physiological deficits with normal aging that likely convey susceptibility to neurodegeneration. While nearby GABAergic neurons ar...
The consequences of aging can vary dramatically between different brain regions and cell types. In the ventral midbrain, dopaminergic neurons develop physiological deficits with normal aging that likely convey susceptibility to neurodegeneration. While nearby GABAergic neurons are thought to be more resilient, decreased GABA signaling in other areas nonetheless correlates with age-related cognitive decline and the development of degenerative diseases. Here, we used two novel cell type-specific Translating Ribosome Affinity Purification models to elucidate the impact of healthy brain aging on the molecular profiles of dopamine and GABA neurons in the ventral midbrain. By analyzing differential gene expression from young adult (7-10 month) and old (21-24 month) mice, we detected commonalities in the aging process in both neuronal types, including increased inflammatory responses and upregulation of pro-survival pathways. Both cell types also showed downregulation of genes involved in synaptic connectivity and plasticity. Intriguingly, genes involved in serotonergic synthesis were upregulated with age in GABA neurons and not dopamine-releasing cells. In contrast, dopaminergic neurons showed alterations in genes connected with mitochondrial function and calcium signaling, which were markedly downregulated in male mice. Sex differences were detected in both neuron types, but in general were more prominent in dopamine neurons. Multiple sex effects correlated with the differential prevalence for neurodegenerative diseases such as Parkinson's and Alzheimer's seen in humans. In summary, these results provide insight into the connection between non-pathological aging and susceptibility to neurodegenerative diseases involving the ventral midbrain, and identify molecular phenotypes that could underlie homeostatic maintenance during normal aging.
Longevity Relevance Analysis
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The paper identifies common gene expression changes in dopamine and GABA neurons during normal aging that may contribute to susceptibility to neurodegenerative diseases. This research is relevant as it explores molecular mechanisms underlying aging processes, which could inform strategies for addressing age-related neurodegeneration.
Intrinsic capacity (IC) refers to physical and mental capacities that determine healthy aging. IC is the central element of the World Health Organization care pathway 'Integrated Care for Older People' (ICOPE). However, the operationalization of a composite IC measurement in clin...
Intrinsic capacity (IC) refers to physical and mental capacities that determine healthy aging. IC is the central element of the World Health Organization care pathway 'Integrated Care for Older People' (ICOPE). However, the operationalization of a composite IC measurement in clinical settings remains to be defined. We used screening data from ICOPE implementation in a real-life population of 27,706 adults 60 years or older that were users of primary care services to elaborate and cross-validate IC scores and centile values for men and women. Here, we show that IC centiles were cross-sectionally associated with comorbidity, frailty and limitations in both activities of daily living and instrumental activities of daily living. External validation using populations from high-income (French INSPIRE-T cohort) and upper-middle-income (ICOPE Brazil) countries validated the associations between IC centiles and clinical outcomes. The IC centiles developed using ICOPE screening data constitute a standardized parameter to monitor individual and population IC through a clinically friendly approach.
Longevity Relevance Analysis
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The paper claims that intrinsic capacity centiles are associated with various clinical health outcomes in older adults. This research is relevant as it addresses the operationalization of intrinsic capacity, which is crucial for understanding and potentially improving healthy aging and longevity.
Fernandez, B., Passanisi, V., Ashraf, H. M. ...
· cell biology
· University of Colorado Boulder
· biorxiv
Quiescence (reversible cell-cycle arrest) and senescence (irreversible arrest) are challenging to distinguish due to a lack of specific biomarkers, yet both arise simultaneously after chemotherapy. While senescence suppresses tumors by limiting proliferation and recruiting the im...
Quiescence (reversible cell-cycle arrest) and senescence (irreversible arrest) are challenging to distinguish due to a lack of specific biomarkers, yet both arise simultaneously after chemotherapy. While senescence suppresses tumors by limiting proliferation and recruiting the immune system, quiescent cancer cells evade future therapies and may resume proliferation. Here, we pair time-lapse imaging of cell-cycle dynamics with single-cell RNA-sequencing after etoposide treatment to differentiate these states, linking heterogeneous cell-cycle phenotypes to the transcriptomic landscape. We identify diverse senescent types (senotypes) and link them to two arrest pathways - a gradual path arising after a standard mitosis-to-G0 transition, and a rarer but direct path driven by a mitotic slip. Using pseudotime trajectory analysis, we find that senescent phenotypes begin to manifest early and gradually along the first trajectory, even in shallow quiescent cells. These data support a model wherein, following chemotherapy, quiescence and senescence exist on a continuum of cell-cycle withdrawal at a transcriptome-wide level.
Longevity Relevance Analysis
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The paper claims to differentiate between quiescence and senescence in cancer cells following chemotherapy through single-cell RNA sequencing. This research is relevant as it addresses the cellular mechanisms underlying aging-related processes, specifically how cancer cells can evade therapies, which ties into the broader understanding of aging and potential interventions.
Florian Geltinger, Susanne Holtze, Thomas Bernd Hildebrandt ...
· American journal of physiology. Lung cellular and molecular physiology
· Institute of Functional Anatomy, Charité - Universitätsmedizin Berlin, Berlin, Germany.
· pubmed
Naked mole-rats (NMR;
Naked mole-rats (NMR;
Longevity Relevance Analysis
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The paper claims to provide insights into the unique biological characteristics of naked mole-rats that contribute to their longevity. Naked mole-rats are known for their exceptional lifespan and resistance to age-related diseases, making them a valuable model for understanding the mechanisms of aging and potential lifespan extension.
Otten, C., Kutnjak, M., Supina-Pavic, C. ...
· developmental biology
· Ruder Boskovic Institute
· biorxiv
DNA-protein crosslinks (DPCs) are toxic DNA lesions that block all DNA transactions including replication and transcription, and the consequences of impaired DNA-Protein Crosslink Repair (DPCR) are severe. At the cellular level, impaired DPCR leads to the formation of double stra...
DNA-protein crosslinks (DPCs) are toxic DNA lesions that block all DNA transactions including replication and transcription, and the consequences of impaired DNA-Protein Crosslink Repair (DPCR) are severe. At the cellular level, impaired DPCR leads to the formation of double strand breaks, genomic instability and cell death, while at the organismal level, it is associated with cancer, aging and neurodegeneration. Despite its importance, the mechanisms of DPCR at the organismal level are largely unknown. Proteases play a central role in DPCR, as they remove proteinaceous part of the DPCs, while the peptide remnant crosslinked to DNA is subsequently removed by other repair factors. We characterized the role of putative protease ACRC/GCNA (ACidic Repeat Containing/Germ Cell Nuclear Antigen) in DPCR at the organismal level. For this purpose, we have created new animal models with CRISPR/Cas system: two zebrafish lines with inactive Acrc. We were able to overcome the early embryonic lethality caused by Acrc inactivation by injecting Acrc-WT mRNA and have created a viable animal model to study the role of Acrc in adult tissues. We identified histone H3, topoisomerases 1 and 2, Dnmt1, Parp1, Polr3a and Mcm2 as DPC substrates of Acrc. We have proven that Acrc is absolutely essential for vertebrate development, and that the mechanism behind it is DPC proteolysis.
Longevity Relevance Analysis
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ACRC/GCNA is essential for DNA-protein crosslink repair during vertebrate development. The study addresses a fundamental mechanism related to genomic stability, which is crucial for understanding aging and age-related diseases.
Ranran Zhao, Weiqi Ge, Weikang Xue ...
· Longevity
· Department of Neurology, Medical Research Institute, Frontier Science Center of Immunology and Metabolism, Zhongnan Hospital of Wuhan University, Wuhan University, Wuhan 430071, China.
· pubmed
The impact of neural activity on aging and longevity remains poorly understood, with limited understanding of the specific neuron groups and molecular mechanisms that regulate lifespan. In this study, we uncover a correlation between human longevity and reduced CaMK4 expression i...
The impact of neural activity on aging and longevity remains poorly understood, with limited understanding of the specific neuron groups and molecular mechanisms that regulate lifespan. In this study, we uncover a correlation between human longevity and reduced CaMK4 expression in the frontal cortex. We further show that this link is conserved in
Longevity Relevance Analysis
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The study claims that reduced CaMK4 expression in the frontal cortex correlates with human longevity. This research is relevant as it investigates the molecular mechanisms that may influence lifespan, addressing the root causes of aging rather than merely treating age-related symptoms.
Rui Ding, Weiyi Huang, Chenling Shen ...
· Aging cell
· Department of Otolaryngology & Head and Neck Surgery, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
· pubmed
Cell death mediated by the abnormal activation of autophagy has been observed in many neurodegenerative diseases. Dual leucine zipper kinase (DLK), a member of the mitogen-activated protein kinase cascade, plays a key role in regulating cellular autophagy and the progression of n...
Cell death mediated by the abnormal activation of autophagy has been observed in many neurodegenerative diseases. Dual leucine zipper kinase (DLK), a member of the mitogen-activated protein kinase cascade, plays a key role in regulating cellular autophagy and the progression of neurodegenerative diseases. However, its role in age-related hearing loss has not been reported. In this study, we found that DLK, phosphorylated c-Jun N-terminal kinase (p-JNK), and JNK3 expression increased in the cochleae of C57BL/6J mice during aging. The DLK/JNK pathway and autophagy are excessively activated in the House Ear Institute-Organ of Corti 1 (HEI-OC1) senescent hair cell line. After DLK was upregulated in HEI-OC1 cells, autophagy was activated, and cell aging was initiated. Inhibiting the DLK/JNK pathway in senescent HEI-OC1 cells can reduce autophagy activation and senescence, and inhibiting autophagy activation can also alleviate senescence. The inhibition of DLK or JNK3 in vivo significantly reduced age-related cochlear structural damage and hearing loss in C57BL/6J mice. The results of the present study showed that DLK/JNK3 may play a key role in cochlear hair cell senescence and age-related hearing loss through the abnormal activation of autophagy within cochlear hair cells, suggesting that DLK or JNK3 may be potential targets for alleviating age-related hearing loss.
Longevity Relevance Analysis
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The paper claims that inhibiting the DLK/JNK pathway can reduce autophagy activation and senescence in cochlear hair cells, potentially alleviating age-related hearing loss. This research addresses the mechanisms of cellular senescence and autophagy in the context of aging, which are fundamental aspects of longevity and age-related diseases.
Seyed Soheil Saeedi Saravi, Benoit Pugin, Florentin Constancias ...
· Nature aging
· Center for Translational and Experimental Cardiology, Department of Cardiology, University Hospital Zurich, University of Zurich, Schlieren, Switzerland. [email protected].
· pubmed
Endothelial cell senescence is a key driver of cardiovascular aging, yet little is known about the mechanisms by which it is induced in vivo. Here we show that the gut bacterial metabolite phenylacetic acid (PAA) and its byproduct, phenylacetylglutamine (PAGln), are elevated in a...
Endothelial cell senescence is a key driver of cardiovascular aging, yet little is known about the mechanisms by which it is induced in vivo. Here we show that the gut bacterial metabolite phenylacetic acid (PAA) and its byproduct, phenylacetylglutamine (PAGln), are elevated in aged humans and mice. Metagenomic analyses reveal an age-related increase in PAA-producing microbial pathways, positively linked to the bacterium Clostridium sp. ASF356 (Clos). We demonstrate that colonization of young mice with Clos increases blood PAA levels and induces endothelial senescence and angiogenic incompetence. Mechanistically, we find that PAA triggers senescence through mitochondrial H
Longevity Relevance Analysis
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The paper claims that the gut bacterial metabolite phenylacetic acid induces endothelial cell senescence, contributing to cardiovascular aging. This research addresses a potential mechanism underlying aging processes, specifically endothelial cell senescence, which is relevant to understanding and potentially mitigating age-related decline.
Sora Q Kim, Redin A Spann, Cristal M Hill ...
· Annual review of nutrition
· 1Pennington Biomedical Research Center, Baton Rouge, Louisiana, USA; email: [email protected].
· pubmed
Recent improvements in human longevity have highlighted the challenge of maintaining health throughout extended lifespans. This review examines how organisms regulate nutrient intake and metabolism, focusing on dietary protein's unique role in health and longevity. While caloric ...
Recent improvements in human longevity have highlighted the challenge of maintaining health throughout extended lifespans. This review examines how organisms regulate nutrient intake and metabolism, focusing on dietary protein's unique role in health and longevity. While caloric restriction enhances longevity, adherence to a low-calorie diet is challenging. Protein restriction represents an alternate nutritional intervention that improves longevity and health in model organisms and may be easier to translate to humans. However, its impacts are complex, and its mechanisms are poorly understood. The beneficial effects of protein restriction on metabolism and longevity may come at a cost to lean mass and physical resilience. Conversely, while public health recommendations often emphasize high protein intake, human epidemiological data and work on model organisms suggest that excessive protein consumption correlates with increased mortality. Understanding this paradox is crucial for developing evidence-based protein intake recommendations that balance longevity with physical performance.
Longevity Relevance Analysis
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Protein restriction may improve longevity and metabolic health but could compromise lean mass and physical resilience. The paper is relevant as it explores dietary interventions that could influence the root causes of aging and longevity, rather than merely addressing age-related diseases.
Deery, H., Moran, C., Liang, E. X. ...
· neuroscience
· Monash University
· biorxiv
It is well established that there is a local increase in cerebral blood flow and glucose metabolism in response to neuronal events. However, there is a paucity of sex disaggregated studies measuring the relationship between cerebral blood flow and glucose metabolism, despite meta...
It is well established that there is a local increase in cerebral blood flow and glucose metabolism in response to neuronal events. However, there is a paucity of sex disaggregated studies measuring the relationship between cerebral blood flow and glucose metabolism, despite metabolic and vascular factors being considered primary drivers of age-related cognitive decline and dementias like Alzheimers, which disproportionally affect women. Here we address this gap by assessing the association of cerebral blood flow and glucose metabolism in the functional networks of 79 younger and older females and males, who completed a simultaneous MR/PET scan and cognitive battery. Our results extend previously reported age-related declines in CBF and CMRglc by demonstrating that their interrelationship changes with age and sex. Older age was associated with a reduction in the correlation strength between network CBF and CMRglc. CBF-CMRglc associations across people were moderated by sex, with significant negative associations in older females, a pattern not seen in older males nor younger adults. People with higher CBF-CMRglc correlations had better cognitive performance. We conclude that older adults lose synchronised vascular and metabolic dynamics in large-scale functional network, which are necessary for cognitive processes. Older females show strong, negative network CBF-CMRglc correlations, possibly reflecting a compensatory response in the face or attenuated rates of blood flow and glucose metabolism. The associations of CBF and CMRglc may serve as a biomarker for brain heath and neurological conditions.
Longevity Relevance Analysis
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The paper claims that older adults experience a loss of synchronized vascular and metabolic dynamics in large-scale functional networks, which are necessary for cognitive processes. This research is relevant as it explores the underlying mechanisms of age-related cognitive decline, particularly in the context of sex differences, which could inform strategies for promoting brain health and addressing age-related diseases.
Anderson, K. A., deSouza, B., Castellano-Escuder, P. ...
· molecular biology
· Duke
· biorxiv
Proper regulation of inflammatory responses is essential for organismal health. Dysregulation can lead to accelerated development of the diseases of aging and the aging process itself. Here, we identify a novel enzymatic activity of the mitochondrial sirtuin SIRT4 as a lysine dei...
Proper regulation of inflammatory responses is essential for organismal health. Dysregulation can lead to accelerated development of the diseases of aging and the aging process itself. Here, we identify a novel enzymatic activity of the mitochondrial sirtuin SIRT4 as a lysine deitaconylase that regulates macrophage inflammatory responses. Itaconate is a metabolite abundantly produced in activated macrophages. We find it forms a protein modification called lysine itaconylation. Using biochemical and proteomics approaches, we demonstrate that SIRT4 efficiently removes this modification from target proteins both in vitro and in vivo. In macrophages, elevated protein itaconylation increases upon LPS stimulation, coinciding with elevated SIRT4 expression. SIRT4-deficient macrophages exhibit significantly increased IL-1{beta} production in response to LPS stimulation. This phenotype is intrinsic to macrophages, as demonstrated by both lentiviral over-expression and acute SIRT4 knockdown models. Mechanistically, we identify key enzymes in branched-chain amino acid (BCAA) metabolism as targets of hyperitaconylation in SIRT4-deficient macrophages. The BCKDH complex component dihydrolipoamide branched chain transacylase E2 (DBT) is hyperitaconylated and has reduced BCKDH activity in SIRT4KO macrophages. Physiologically, SIRT4-deficient mice exhibit significantly delayed wound healing, demonstrating a consequence of dysregulated macrophage function. Our data reveal a novel protein modification pathway in immune cells and establish SIRT4 as a critical regulator at the intersection of metabolism and inflammation. These findings have implications for understanding immune dysregulation in aging and metabolic disease.
Longevity Relevance Analysis
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SIRT4 regulates macrophage inflammatory responses through its activity as a lysine deitaconylase, impacting wound healing and immune function. The study addresses the role of immune dysregulation in aging and metabolic disease, which are critical factors in the aging process.
Dengler, L., Padovani, F., Lemke, B. ...
· cell biology
· Molecular Cell Biology, Institute of Cell Biology, University of Tübingen, Germany
· biorxiv
Mitochondrial biogenesis and inheritance must be carefully regulated alongside cell division to ensure proper mitochondrial function and cell survival. The dynamics of the mitochondrial network, including fusion and fission, play a crucial role in mitochondrial inheritance by fac...
Mitochondrial biogenesis and inheritance must be carefully regulated alongside cell division to ensure proper mitochondrial function and cell survival. The dynamics of the mitochondrial network, including fusion and fission, play a crucial role in mitochondrial inheritance by facilitating the distribution and quality control of mitochondria. In budding yeast, simultaneous inhibition of both fusion and fission leads to loss of mitochondrial DNA (mtDNA) integrity, resulting in an increased frequency of petite cells. Loss of mitochondrial fusion alone results in the complete loss of mtDNA. While the loss of mtDNA in the absence of mitochondrial fusion has been known for almost 30 years, the reason remained unclear. Here, we investigate the consequences of impaired mitochondrial fusion through depletion of the mitofusin Fzo1. We follow the emerging phenotype by live-cell imaging and the analysis of more than thirty thousand single cells across their cell cycle. Fzo1 depletion causes rapid mitochondrial fragmentation and a reduction in mitochondrial membrane potential, followed by a progressive decline of mtDNA content and cellular growth rate over several cell divisions. During division, Fzo1-depleted daughters obtain an unusually large amount of mitochondria, leaving the mother with too little. This results in a strong disbalance of mitochondrial mass in the population. Additionally, Fzo1-depleted cells lose the ability to adjust mtDNA synthesis to compensate for a low mitochondrial content. The combined effects of unequal distribution and reduced synthesis drive rapid mtDNA loss. These results show how fusion defects lead to mtDNA loss and mitochondrial dysfunction, contributing to understanding diseases linked to fusion defects.
Longevity Relevance Analysis
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Impaired mitochondrial fusion leads to rapid mitochondrial fragmentation and loss of mtDNA, contributing to mitochondrial dysfunction. The study addresses fundamental mechanisms of mitochondrial health, which are crucial for understanding aging and age-related diseases.
Meijie Jiang, Yuting Wang, Sifan Tian ...
· Environmental science & technology
· Department of Occupational and Environmental Health Sciences, School of Public Health, Peking University, No. 38 Xueyuan Road, Beijing 100191, China.
· pubmed
Frailty is an underappreciated but modifiable clinical syndrome, but little about how air quality improvements could influence frailty progression is known. Here, we utilized two Chinese cohorts with repeated follow-up visits to address this knowledge gap and explored the underly...
Frailty is an underappreciated but modifiable clinical syndrome, but little about how air quality improvements could influence frailty progression is known. Here, we utilized two Chinese cohorts with repeated follow-up visits to address this knowledge gap and explored the underlying DNA methylation mechanisms. We first conducted a multistate modeling analysis in the Chinese Longitudinal Healthy Longevity Study (CLHLS), a nationwide cohort with 21,654 older adults who had participated in at least two survey waves. An interquartile range reduction in PM
Longevity Relevance Analysis
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Air pollution control can slow the progression of frailty in older adults through underlying DNA methylation mechanisms. This paper addresses a modifiable factor related to aging and frailty, which are critical aspects of longevity research.
Xin Dong, Zhen Zhou, Yanan Wang ...
· Genomics, proteomics & bioinformatics
· State Key Laboratory of Genetic Evolution & Animal Models, Key Laboratory of Healthy Aging Research of Yunnan Province, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China.
· pubmed
Circular RNAs (circRNAs) represent a novel class of RNA molecules characterized by a circular structure and enhanced stability. Emerging evidence indicates that circRNAs play pivotal regulatory roles in the aging process. Despite this, there is a lack of a systematic resource tha...
Circular RNAs (circRNAs) represent a novel class of RNA molecules characterized by a circular structure and enhanced stability. Emerging evidence indicates that circRNAs play pivotal regulatory roles in the aging process. Despite this, there is a lack of a systematic resource that integrates aging-associated circRNA data. Therefore, we developed a comprehensive database named CircAge, which encompasses 803 aging-related samples from 7 species and 24 tissue types. Through high-throughput sequencing, we also generated 47 new tissue samples from mice and rhesus monkeys. Integrating predictions from multiple bioinformatics tools, we identified over 529,856 unique circRNAs. Our data analysis revealed a general increase in circRNA expression levels with age, with approximately 23% of circRNAs demonstrating sequence conservation across species. The CircAge database systematically predicts potential interactions between circRNAs, microRNAs (miRNAs), and RNA-binding proteins (RBPs), and assesses the coding potential of circRNAs. This resource lays a foundation for elucidating the regulatory mechanisms of circRNAs in aging. As a comprehensive repository of aging-associated circRNAs, CircAge will significantly accelerate research in this field, facilitating the discovery of novel biomarkers and therapeutic targets for aging biology and developing diagnostic and therapeutic strategies for aging and age-related diseases. CircAge is publicly available at https://circage.kiz.ac.cn.
Longevity Relevance Analysis
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The paper claims to provide a comprehensive database of aging-associated circular RNAs that could facilitate the discovery of novel biomarkers and therapeutic targets for aging biology. The research is relevant as it addresses the regulatory mechanisms of circRNAs in the aging process, which could contribute to understanding the root causes of aging and age-related diseases.
Badenoch, B., Fiehn, O., Rappaport, N. ...
· bioinformatics
· Department of Molecular and Cellular Pathology, University of Michigan, Ann Arbor, MI 48103
· biorxiv
Tests that can predict whether a drug is likely to extend mouse lifespan could speed up the search for anti-aging drugs. We have applied a machine learning algorithm, XGBoost regression, to seek sets of plasma metabolites that can discriminate control mice from mice treated with ...
Tests that can predict whether a drug is likely to extend mouse lifespan could speed up the search for anti-aging drugs. We have applied a machine learning algorithm, XGBoost regression, to seek sets of plasma metabolites that can discriminate control mice from mice treated with an anti-aging diet (caloric restriction) or any of four anti-aging drugs. When the model is trained on any four of these five interventions, it predicts significantly higher lifespan extension in mice exposed to the intervention which was not included in the training set. Plasma peptide data sets also succeed at this task. Models trained on drug-treated normal mice also discriminate long-lived mutant mice from their respective controls, and models trained on males can discriminate drug-treated from control females. Triglycerides are over-represented among the most influential features in the regression models. Triglycerides with longer fatty acid chains tend to be higher in the slow-aging mice, while triglycerides with shorter fatty acid chains tend to decrease. Plasma metabolite patterns may help to select the most promising anti-aging drugs in mice or in humans, and may give new leads into physiological and enzymatic targets relevant to discovery of new anti-aging drugs.
Longevity Relevance Analysis
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The paper claims that plasma metabolomic and proteomic features can discriminate between normal and slow-aging mice, potentially aiding in the identification of effective anti-aging interventions. This research is relevant as it addresses the identification of biomarkers associated with aging and lifespan extension, which are crucial for developing therapies targeting the root causes of aging.
Chen, J., Wen, Y., Chen, S. ...
· molecular biology
· Nanfang Hospital of Southern Medical University
· biorxiv
Objective: Investigate miR-486-3p's role in alleviating age-related angiogenic decline in Moyamoya disease (MMD) by regulating senescent endothelial cells. Methods: Clinical analysis of 151 MMD patients correlated age with postoperative angiogenesis (DSA grading). Senescent HUVEC...
Objective: Investigate miR-486-3p's role in alleviating age-related angiogenic decline in Moyamoya disease (MMD) by regulating senescent endothelial cells. Methods: Clinical analysis of 151 MMD patients correlated age with postoperative angiogenesis (DSA grading). Senescent HUVECs (SA-{beta}-gal>80%) exhibited elevated SASP factors (IL-6/IL-8/MCP-1). Functional assays (EdU/Transwell/Matrigel) and bioinformatics identified miR-486-3p targets, validated via luciferase/Western blot. Results: Patients [≥]35 years had 3.67-fold higher risk of poor angiogenesis (OR=3.67). Senescent HUVECs showed 10-16-fold higher SASP secretion (p<0.01). miR-486-3p overexpression increased proliferation (EdU+25%), migration (1.7-fold), and tube formation (+40% branches) in senescent cells (p<0.01) and enhanced angiogenesis in vivo (p<0.001). miR-486-3p directly targeted FOXO4, reducing its luciferase activity (-35%) and protein levels (-37%) (p<0.01), suppressing SASP. Conclusion: miR-486-3p enhances post-revascularization angiogenesis in MMD by inhibiting FOXO4-mediated SASP, offering a therapeutic target and predictive biomarker.
Longevity Relevance Analysis
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miR-486-3p enhances angiogenesis in moyamoya disease by targeting FOXO4 to suppress senescence-associated secretory phenotype (SASP). The paper addresses a mechanism related to aging by targeting cellular senescence, which is a key factor in age-related decline in tissue regeneration and function.
Paterson, T., Rohrs, J., Hohman, T. J. ...
· neuroscience
· Institute for Systems Biology
· biorxiv
Age and APOE genotype are the strongest known risk factors for late-onset Alzheimer's disease (AD), but the mechanisms linking them to neuronal loss remain incompletely defined. Using multiomic data from the Alzheimer's Disease Neuroimaging Initiative (ADNI), we propose a unified...
Age and APOE genotype are the strongest known risk factors for late-onset Alzheimer's disease (AD), but the mechanisms linking them to neuronal loss remain incompletely defined. Using multiomic data from the Alzheimer's Disease Neuroimaging Initiative (ADNI), we propose a unified hypothesis in which two interdependent failure modes--saturation of microglial lipid flux capacity and disruption of the astrocyte--neuron lactate shuttle (ANLS) due to excess astrocytic membrane cholesterol--drive disease progression upstream of amyloid and tau pathology. Stratifying participants by cognitive score quartiles, we find consistent associations linking impaired lipid clearance, metabolic stress, and genetic variants regulating cholesterol handling. These processes appear to reinforce each other, resulting in accelerating neurodegeneration. Our hypothesis reframes AD as a systems-level collapse in metabolic coordination, rather than a purely linear pathological cascade. These insights emerged during the development of digital twin models for personalized interventions, highlighting the power of systems approaches to reveal hidden drivers of neurodegeneration.
Longevity Relevance Analysis
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The paper proposes that the saturation of microglial lipid flux capacity and disruption of the astrocyte-neuron lactate shuttle drive Alzheimer's disease progression. This research is relevant as it seeks to understand underlying mechanisms of neurodegeneration, which could inform strategies for addressing age-related cognitive decline.
Deepak Jugran
· Longevity
· Not available
· pubmed
Since the dawn of human civilisation, the pursuit of immortality has been a perennial quest. Over the past century, unprecedented advancements in medical science, public health initiatives, and social policies have significantly increased the global human lifespan. The debate bet...
Since the dawn of human civilisation, the pursuit of immortality has been a perennial quest. Over the past century, unprecedented advancements in medical science, public health initiatives, and social policies have significantly increased the global human lifespan. The debate between lifespan (the total number of years a person lives) and health span (the period of life free from chronic disease or disability) has gained considerable attention in both scientific and public discourse, with global focus now gradually shifting from merely living longer to living better. With this increase, a critical question has emerged: are these additional years truly spent in good health? As the global elderly population projected to reach 2.1 billion by 2050, this demographic shift is expected to place a substantial burden on health care systems, economic structures, and social frameworks. Emerging research in epigenetics, regenerative medicine, and lifestyle medicine suggests that preventive measures and personalised interventions can compress morbidity, promote healthier ageing trajectories, and ultimately increase health span. We review current lifespan and health span frameworks to foster dialogue among basic scientists, clinical specialists, social scientists, public health experts, and policymakers, advocating for a balanced approach that prioritises extending healthy, functional years of life over simply increasing lifespan.
Longevity Relevance Analysis
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The paper advocates for a balanced approach prioritizing health span over lifespan. It is relevant as it addresses the critical issue of improving the quality of life in the aging population rather than merely extending life.